Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
68
DNase-seq
24
total RNA-seq
12
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
284
DNA binding
81
DNA accessibility
31
Transcription
3D chromatin structure
3
DNA methylation
Target of assay
236
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
48
control
3
RNA binding protein
3
transcription factor
Date released
155
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
16
July, 2019
16
October, 2017
15
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
357
bam
310
bigWig
295
bed narrowPeak
211
bigBed narrowPeak
118
tagAlign
83
bed broadPeak
74
bigBed broadPeak
68
bed bed3+
33
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
401
Homo sapiens
Biosample type
383
tissue
18
primary cell
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
401
AMP
Genome assembly (visualization)
313
GRCh38
257
hg19
Lab
401
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
401 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
1
+ See 90 more…
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
See all biosamples
Download