Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
83
DNA binding
31
DNA accessibility
10
DNA methylation
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
33
June, 2019
22
July, 2019
16
May, 2019
7
October, 2019
5
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
135
bam
120
bigWig
113
tsv
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
Organism
238
Homo sapiens
Biosample type
226
tissue
11
primary cell
1
in vitro differentiated cells
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
119
GRCh38
113
hg19
Lab
238
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_slims!
3D chromatin structure
organ_slims!
artery
BIOSAMPLE
ASSAY
238 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
3
4
2
1
1
heart
1
14
18
4
1
1
heart right ventricle
17
13
1
1
2
1
right cardiac atrium
18
6
1
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download