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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
RRBS
1
small RNA-seq
Assay category
115
Transcription
82
DNA accessibility
27
DNA binding
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
127
August, 2021
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
85
bed narrowPeak
64
xls
62
txt
30
bam
23
bigWig
19
bigBed narrowPeak
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
230
Homo sapiens
Biosample type
230
tissue
23
primary cell
19
cell line
Organ
546
connective tissue
497
pancreas
487
adipose tissue
360
liver
283
heart
240
brain
230
kidney
158
bone element
129
blood vessel
129
vasculature
86
limb
71
artery
53
eye
44
musculature of body
43
nerve
25
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
183
AMP
47
KPMP
Genome assembly (visualization)
97
GRCh38
24
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
42
AMP-T2D consortium
Audit category:
7
audit script error
assay_slims!
3D chromatin structure
month_released!
June, 2019
BIOSAMPLE
ASSAY
230 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
RRBS
small RNA-seq
tissue
kidney
75
64
49
27
6
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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