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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
39
ChIP-seq
1
DNase-seq
1
FAIRE-seq
Assay category
66
DNA accessibility
39
DNA binding
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
transcription factor
7
recombinant protein
2
RNA binding protein
Date released
64
August, 2021
18
April, 2019
16
October, 2019
4
May, 2019
2
June, 2019
1
July, 2019
Available data
183
bed narrowPeak
144
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
85
tissue
12
primary cell
8
cell line
Organ
384
liver
195
pancreas
161
heart
156
brain
131
epithelium
118
blood vessel
118
vasculature
105
kidney
70
artery
65
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
25
nerve
14
embryo
14
musculature of body
13
spleen
11
vein
10
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
105
AMP
Genome assembly (visualization)
104
GRCh38
41
hg19
Lab
64
Katalin Susztak, Upenn
41
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
assay_slims!
3D chromatin structure
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
tissue
kidney
64
20
1
primary cell
epithelial cell of proximal tubule
8
kidney epithelial cell
4
cell line
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
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