Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
53
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
118
Transcription
37
DNA binding
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
129
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
17
October, 2019
14
May, 2023
8
February, 2021
4
July, 2019
2
December, 2019
2
March, 2020
Available data
160
bed narrowPeak
111
bam
101
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
314
Homo sapiens
Biosample type
297
tissue
17
cell line
Organ
937
pancreas
787
liver
683
connective tissue
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
267
AMP
47
KPMP
Genome assembly (visualization)
175
GRCh38
101
hg19
Lab
141
Katalin Susztak, Upenn
124
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
6
audit script error
assay_slims!
3D chromatin structure
organ_slims!
epithelium
BIOSAMPLE
ASSAY
314 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
27
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
RCC 7860 VHL
1
See all biosamples
Download