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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
9
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
2
February, 2020
2
March, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
89
Homo sapiens
Biosample type
75
tissue
14
primary cell
Organ
936
pancreas
784
liver
678
connective tissue
516
epithelium
489
adipose tissue
351
kidney
347
heart
281
brain
230
vasculature
224
blood vessel
158
bone element
141
artery
118
limb
89
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
20
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
89
AMP
Genome assembly (visualization)
71
hg19
53
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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