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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
7
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
February, 2020
2
May, 2022
January, 2018
Available data
67
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
87
Homo sapiens
Biosample type
73
tissue
14
primary cell
Organ
936
pancreas
786
liver
680
connective tissue
516
epithelium
488
adipose tissue
387
heart
353
kidney
271
brain
228
vasculature
222
blood vessel
159
bone element
139
artery
115
limb
87
musculature of body
68
blood
68
bodily fluid
60
eye
42
nerve
36
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
70
hg19
53
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
month_released!
January, 2018
February, 2020
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
RRBS
total RNA-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
1
forelimb muscle
1
+ See 1 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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