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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
39
ChIP-seq
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
52
DNA accessibility
39
DNA binding
9
Transcription
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
61
June, 2019
26
August, 2017
7
May, 2019
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
January, 2018
Available data
85
bigWig
78
bed narrowPeak
75
bam
65
bigBed narrowPeak
64
bed broadPeak
52
bed bed3+
51
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
107
Homo sapiens
Biosample type
93
tissue
14
primary cell
Organ
937
pancreas
787
liver
682
connective tissue
516
epithelium
490
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
89
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
Genome assembly (visualization)
88
hg19
71
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
3D chromatin structure
month_released!
January, 2018
BIOSAMPLE
ASSAY
107 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
13
7
1
muscle of arm
17
renal pelvis
10
left renal pelvis
4
+ See 6 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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