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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
1
total RNA-seq
Assay category
16
DNA binding
2
DNA accessibility
2
DNA methylation
1
Transcription
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
3
January, 2019
1
February, 2020
1
March, 2020
1
October, 2017
Available data
20
bam
20
fastq
12
bigWig
10
bed narrowPeak
9
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
22
Homo sapiens
Biosample type
22
tissue
Organ
859
pancreas
745
liver
639
connective tissue
472
epithelium
471
adipose tissue
338
kidney
333
heart
213
brain
186
vasculature
180
blood vessel
159
bone element
127
artery
84
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
12
GRCh38
10
hg19
Lab
22
AMP-T2D consortium
assay_slims!
3D chromatin structure
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
total RNA-seq
tissue
spleen
16
2
1
1
1
C1 segment of cervical spinal cord
1
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