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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
17
DNA binding
3
DNA accessibility
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
1
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
1
tsv
Organism
21
Homo sapiens
Biosample type
20
primary cell
1
tissue
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
353
kidney
350
heart
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
15
hg19
12
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
1
tissue
gastric (mucosa of stomach)
1
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