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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
9
DNA accessibility
9
DNA binding
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
January, 2021
4
January, 2019
3
November, 2018
2
December, 2018
1
January, 2018
Available data
9
bam
9
fastq
4
bigWig
3
bed narrowPeak
3
bigBed narrowPeak
Organism
18
Homo sapiens
Biosample type
10
cell line
8
primary cell
Organ
918
pancreas
643
connective tissue
507
epithelium
474
adipose tissue
449
liver
343
kidney
338
heart
280
brain
222
vasculature
217
blood vessel
159
bone element
136
artery
118
limb
90
musculature of body
60
eye
43
nerve
34
embryo
20
lung
20
vein
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
10
AMP
8
T1D
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
10
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_slims!
3D chromatin structure
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
9
1
primary cell
peripheral blood mononuclear cell
8
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