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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
5
WGBS
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
193
Transcription
DNA accessibility
7
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
August, 2017
50
November, 2018
34
August, 2021
20
May, 2022
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
March, 2020
1
February, 2020
Available data
673
bam
595
bigWig
460
fastq
413
bed narrowPeak
352
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
7
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
csv
1
vcf
Organism
758
Homo sapiens
Biosample type
398
cell line
335
tissue
15
in vitro differentiated cells
10
primary cell
Organ
764
pancreas
758
liver
649
connective tissue
483
adipose tissue
393
epithelium
273
heart
246
brain
190
kidney
173
vasculature
169
blood vessel
147
bone element
92
artery
74
limb
60
blood
60
bodily fluid
55
musculature of body
40
nerve
37
embryo
29
eye
23
spleen
17
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
758
AMP
Genome assembly (visualization)
594
hg19
523
GRCh38
Lab
708
AMP-T2D consortium
30
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
assay_title!
Hi-C
BIOSAMPLE
ASSAY
758 results
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ChIP-seq
total RNA-seq
WGBS
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
tissue
liver
145
167
3
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
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