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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
1
Hi-C
Assay category
DNA accessibility
53
DNA binding
1
3D chromatin structure
Target of assay
25
histone
25
histone modification
19
transcription factor
13
narrow histone mark
12
broad histone mark
9
control
2
RNA binding protein
Date released
33
August, 2017
15
December, 2017
3
August, 2021
2
September, 2017
1
October, 2019
Available data
2672
bigWig
2641
bam
1400
tsv
1217
bed narrowPeak
898
fastq
767
bigBed narrowPeak
246
tagAlign
76
bed broadPeak
62
bigBed broadPeak
54
bed bed3+
17
bed bedMethyl
17
bigBed bedMethyl
1
hdf5
1
hic
1
tagAlign bed3+
Organism
54
Homo sapiens
Biosample type
28
tissue
19
in vitro differentiated cells
3
primary cell
3
stem cell
1
cell line
Organ
22
pancreas
11
connective tissue
6
liver
4
adipose tissue
3
embryo
3
epithelium
Project
54
AMP
Genome assembly (visualization)
64
hg19
54
GRCh38
Lab
54
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
54 results
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Clear Filters
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
primary cell
hepatocyte
3
stem cell
hESC
3
cell line
Panc1
1
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