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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
228
ChIP-seq
Assay category
228
DNA binding
Target of assay
223
histone
223
histone modification
127
narrow histone mark
96
broad histone mark
5
transcription factor
Date released
84
May, 2021
54
November, 2017
40
October, 2019
19
May, 2020
17
August, 2017
6
October, 2017
5
February, 2021
3
August, 2021
Available data
2430
bigWig
2394
bam
1273
tsv
1107
bed narrowPeak
781
fastq
753
bigBed narrowPeak
228
tagAlign
76
bed broadPeak
62
bigBed broadPeak
35
bed bed3+
17
bed bedMethyl
17
bigBed bedMethyl
1
hdf5
1
hic
1
tagAlign bed3+
Organism
222
Homo sapiens
Biosample type
116
tissue
98
primary cell
in vitro differentiated cells
14
cell line
Organ
82
brain
31
liver
6
pancreas
4
artery
4
blood vessel
4
heart
4
vasculature
3
epithelium
1
pituitary gland
Project
144
AMP
84
T1D
Genome assembly (visualization)
228
GRCh38
221
hg19
Lab
144
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
228 results
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ChIP-seq
tissue
liver
19
caudate nucleus
12
substantia nigra
12
layer of hippocampus
11
brain
6
+ See 40 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
cell line
HepG2
9
smooth muscle cell of the coronary artery
4
iPSC derived cell line
1
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