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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
89
total RNA-seq
2
WGBS
Assay category
99
DNA binding
89
Transcription
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
550
February, 2021
252
November, 2017
221
May, 2021
190
August, 2017
188
May, 2020
164
July, 2018
74
October, 2019
73
July, 2019
70
November, 2018
63
May, 2019
62
December, 2017
49
April, 2018
43
September, 2018
42
April, 2019
36
October, 2018
30
December, 2018
27
November, 2019
25
May, 2024
23
February, 2018
23
January, 2019
22
August, 2021
13
March, 2020
12
June, 2019
5
December, 2019
5
October, 2017
4
November, 2020
3
August, 2018
3
June, 2018
2
September, 2017
1
March, 2023
1
May, 2023
Available data
190
bam
190
fastq
188
bigWig
89
tsv
69
bed narrowPeak
27
bed bed3+
19
bigBed narrowPeak
11
bed broadPeak
10
tagAlign
7
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
186
Homo sapiens
Biosample type
137
tissue
36
in vitro differentiated cells
17
primary cell
Organ
120
pancreas
50
connective tissue
14
adipose tissue
13
liver
6
epithelium
Project
190
AMP
Genome assembly (visualization)
206
hg19
190
GRCh38
Lab
190
AMP-T2D consortium
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
assay_slims!
DNA accessibility
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
tissue
islet of Langerhans
13
89
liver
13
white adipose tissue
12
pancreas
8
adipose tissue
2
in vitro differentiated cells
adipocyte
36
primary cell
skeletal muscle myoblast
7
pancreatic endocrine cell
4
pancreatic alpha cell
3
pancreatic beta cell
3
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