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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
Assay category
DNA accessibility
27
DNA binding
6
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
15
August, 2017
8
June, 2019
6
May, 2019
5
July, 2019
4
March, 2020
Available data
33
bigWig
27
bed narrowPeak
20
bam
14
bigBed narrowPeak
13
bed broadPeak
13
tagAlign
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
38
Homo sapiens
Biosample type
27
tissue
11
primary cell
Organ
597
liver
579
pancreas
556
connective tissue
418
adipose tissue
261
epithelium
149
heart
143
vasculature
140
brain
139
blood vessel
79
artery
58
bone element
56
kidney
54
blood
54
bodily fluid
52
limb
38
musculature of body
29
embryo
28
nerve
14
vein
12
spleen
3
eye
2
pericardium
1
pituitary gland
Project
38
AMP
Genome assembly (visualization)
38
hg19
20
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
tissue
skeletal muscle tissue
13
1
2
1
muscle of leg
6
psoas muscle
2
2
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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