Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
86
ChIP-seq
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
99
Transcription
86
DNA binding
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
151
May, 2021
41
May, 2020
10
February, 2023
4
March, 2020
Available data
178
bam
178
bigWig
92
tsv
86
bed narrowPeak
84
tagAlign
Organism
206
Homo sapiens
Biosample type
191
primary cell
10
tissue
5
cell line
Organ
9
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3298
AMP
227
HPAP
206
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
178
GRCh38
178
hg19
Lab
202
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
206 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
+ See 28 more…
tissue
islet of Langerhans
7
2
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download