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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
total RNA-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
467
Transcription
DNA accessibility
6
DNA methylation
Date released
477
February, 2021
400
August, 2017
291
May, 2021
247
October, 2019
236
May, 2020
193
August, 2021
162
July, 2018
117
May, 2019
101
May, 2022
98
July, 2019
92
February, 2023
91
November, 2017
90
December, 2017
80
April, 2019
76
October, 2018
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
41
March, 2020
40
May, 2024
39
February, 2018
24
February, 2020
20
November, 2019
17
November, 2018
15
October, 2017
9
April, 2020
9
June, 2019
8
December, 2019
8
November, 2020
7
December, 2018
7
January, 2019
6
September, 2017
5
January, 2018
4
August, 2018
4
May, 2023
3
March, 2023
3
October, 2022
2
June, 2018
1
March, 2019
Available data
463
tsv
450
bam
449
bigWig
18
fastq
6
csv
5
txt
1
bed bed3+
Organism
477
Homo sapiens
Biosample type
453
tissue
cell line
20
primary cell
4
in vitro differentiated cells
Organ
450
connective tissue
386
adipose tissue
58
bone element
8
kidney
6
epithelium
6
pancreas
1
liver
Project
459
AMP
18
HPAP
Genome assembly (visualization)
450
hg19
449
GRCh38
Lab
459
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
5
audit script error
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 4 more…
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
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