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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
13
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
Assay category
65
Transcription
25
DNA methylation
8
3D chromatin structure
DNA accessibility
Target of assay
3
control
Date released
534
February, 2021
406
November, 2017
333
August, 2017
262
October, 2019
237
May, 2020
232
May, 2021
204
August, 2021
162
July, 2018
117
May, 2019
101
May, 2022
98
July, 2019
96
February, 2023
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
56
September, 2020
51
December, 2017
49
April, 2018
47
September, 2023
44
March, 2020
40
May, 2024
35
December, 2018
30
January, 2019
24
February, 2020
20
November, 2019
15
October, 2017
9
April, 2020
9
June, 2019
8
December, 2019
8
November, 2020
6
September, 2017
5
March, 2023
4
May, 2023
4
October, 2022
3
August, 2018
2
June, 2018
1
January, 2018
1
March, 2019
Available data
77
bigWig
74
bam
65
tsv
21
bed bedMethyl
21
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
98
Homo sapiens
Biosample type
69
tissue
29
primary cell
Organ
20
heart
17
connective tissue
16
brain
12
adipose tissue
12
epithelium
10
liver
10
musculature of body
10
vasculature
9
blood vessel
9
kidney
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
98
AMP
Genome assembly (visualization)
82
hg19
73
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
tissue
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 19 more…
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