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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
230
ChIP-seq
25
total RNA-seq
4
pCHi-C
3
Hi-C
Assay category
230
DNA binding
DNA accessibility
25
Transcription
3
3D chromatin structure
Target of assay
194
histone
194
histone modification
139
narrow histone mark
55
broad histone mark
36
control
Date released
538
February, 2021
406
November, 2017
400
August, 2017
291
May, 2021
262
October, 2019
237
May, 2020
234
August, 2021
162
July, 2018
117
May, 2019
101
May, 2022
98
February, 2023
98
July, 2019
90
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
45
March, 2020
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
20
November, 2019
15
October, 2017
9
April, 2020
9
June, 2019
8
December, 2019
8
November, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
2
June, 2018
1
March, 2019
Available data
218
bam
179
bigWig
165
bed narrowPeak
58
bigBed narrowPeak
49
tagAlign
11
tsv
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed bed3+
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
Organism
262
Homo sapiens
Biosample type
220
tissue
27
primary cell
15
cell line
Organ
83
brain
63
limb
41
blood vessel
41
vasculature
39
nerve
28
epithelium
23
artery
20
eye
18
vein
14
kidney
14
pancreas
8
heart
6
liver
4
gonad
4
ovary
1
connective tissue
1
lymph node
1
pituitary gland
Project
262
AMP
Genome assembly (visualization)
183
hg19
179
GRCh38
Lab
262
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
262 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
4
tibial nerve
35
4
tibial artery
23
heart
5
2
1
brain
5
1
+ See 75 more…
primary cell
endothelial cell of umbilical vein
17
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
13
1
glomerular visceral epithelial cell
1
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