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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
Assay category
160
DNA binding
Target of assay
94
histone
94
histone modification
66
control
62
broad histone mark
32
narrow histone mark
Date released
60
November, 2017
47
August, 2017
23
May, 2020
9
August, 2021
9
October, 2019
8
October, 2017
3
February, 2021
1
May, 2021
Available data
368
bam
311
fastq
186
tsv
160
tagAlign
157
txt
118
bigWig
97
bed narrowPeak
93
zippedFastqFolder
56
bigBed narrowPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
159
Homo sapiens
Biosample type
133
tissue
23
in vitro differentiated cells
3
cell line
1
primary cell
Organ
75
brain
44
liver
21
connective tissue
7
adipose tissue
5
pancreas
2
artery
2
blood vessel
2
epithelium
2
heart
2
musculature of body
2
vasculature
Project
160
AMP
Genome assembly (visualization)
244
GRCh38
hg19
Lab
160
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent assembly
assembly!
hg19
BIOSAMPLE
ASSAY
160 results
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ChIP-seq
tissue
liver
43
caudate nucleus
14
layer of hippocampus
14
substantia nigra
14
cingulate gyrus
12
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in vitro differentiated cells
adipocyte
14
neural progenitor cell
8
pancreatic PP cell
1
cell line
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
primary cell
hepatocyte
1
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