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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
Assay category
DNA accessibility
56
DNA binding
Target of assay
51
histone
51
histone modification
28
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
39
August, 2017
12
November, 2017
3
October, 2017
2
October, 2019
Available data
2433
bam
2262
bigWig
1468
tsv
893
bed narrowPeak
829
fastq
448
bigBed narrowPeak
378
tagAlign
156
txt
93
zippedFastqFolder
62
bed bed3+
56
bed broadPeak
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
bigBed broadPeak
21
hic
8
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
50
Homo sapiens
Biosample type
cell line
35
tissue
21
primary cell
Organ
15
brain
13
musculature of body
12
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
56
AMP
Genome assembly (visualization)
56
hg19
32
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
cell line
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
See all biosamples
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