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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
1
pCHi-C
Assay category
14
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
1
August, 2018
1
August, 2021
1
November, 2019
1
October, 2019
Available data
2301
bam
2177
bigWig
1363
tsv
906
bed narrowPeak
818
fastq
428
bigBed narrowPeak
375
tagAlign
93
zippedFastqFolder
72
txt
62
bed bed3+
56
bed broadPeak
33
bed bedMethyl
33
bigBed bedMethyl
21
bigBed broadPeak
17
hic
15
bedpe bed3+
8
csv
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
Organism
15
Homo sapiens
Biosample type
10
tissue
4
primary cell
cell line
1
in vitro differentiated cells
Organ
6
pancreas
4
epithelium
3
heart
2
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
liver
1
vein
Project
12
AMP
3
HPAP
Genome assembly (visualization)
13
hg19
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
biosample_type!
cell line
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
15 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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