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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
3
pCHi-C
Assay category
15
3D chromatin structure
Date released
12
March, 2020
3
October, 2019
October, 2022
1
August, 2018
1
August, 2021
1
November, 2019
Available data
2433
bam
2302
bigWig
1468
tsv
933
bed narrowPeak
829
fastq
448
bigBed narrowPeak
378
tagAlign
156
txt
93
zippedFastqFolder
62
bed bed3+
56
bed broadPeak
35
bed bedMethyl
35
bigBed bedMethyl
21
bigBed broadPeak
18
bedpe bed3+
18
hic
8
csv
4
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
18
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
cell line
1
primary cell
Organ
3
heart
3
pancreas
2
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
epithelium
1
liver
1
vein
Project
18
AMP
Genome assembly (visualization)
16
hg19
Lab
17
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
cell line
month_released!
October, 2022
BIOSAMPLE
ASSAY
18 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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