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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
total RNA-seq
174
ChIP-seq
4
WGBS
3
RRBS
3
small RNA-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
180
Transcription
174
DNA binding
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
52
August, 2017
20
May, 2022
12
July, 2019
6
October, 2019
5
December, 2019
4
August, 2021
4
November, 2018
3
March, 2020
1
February, 2020
1
February, 2021
Available data
309
bam
265
bigWig
160
tsv
106
bed narrowPeak
94
fastq
74
tagAlign
59
bigBed narrowPeak
7
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
364
Homo sapiens
Biosample type
cell line
337
tissue
15
in vitro differentiated cells
12
primary cell
Organ
701
pancreas
650
connective tissue
483
adipose tissue
362
liver
342
epithelium
258
heart
249
brain
173
kidney
147
bone element
120
vasculature
116
blood vessel
78
limb
61
musculature of body
40
nerve
34
artery
29
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
364
AMP
Genome assembly (visualization)
270
hg19
257
GRCh38
Lab
344
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
biosample_type!
cell line
BIOSAMPLE
ASSAY
364 results
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total RNA-seq
ChIP-seq
WGBS
RRBS
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
145
3
1
1
1
1
1
right lobe of liver
3
10
1
2
pericardium
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
endothelial cell of hepatic sinusoid
1
pericardium fibroblast
1
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