Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
54
total RNA-seq
37
ChIP-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
DNA accessibility
119
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
60
August, 2021
47
September, 2023
23
April, 2019
18
October, 2019
8
February, 2021
3
December, 2019
3
July, 2019
3
May, 2023
2
March, 2020
Available data
62
txt
43
bam
33
bigWig
27
bed narrowPeak
18
bigBed narrowPeak
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
167
Homo sapiens
Biosample type
149
tissue
primary cell
18
cell line
Organ
751
liver
619
connective tissue
498
pancreas
481
adipose tissue
266
heart
233
brain
167
kidney
148
blood vessel
148
vasculature
146
bone element
90
artery
86
epithelium
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
37
embryo
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
47
KPMP
Genome assembly (visualization)
35
hg19
33
GRCh38
Lab
61
Katalin Susztak, Upenn
57
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
assay_slims!
DNA accessibility
biosample_type!
primary cell
BIOSAMPLE
ASSAY
167 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
kidney
64
49
27
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
RCC 7860 VHL
1
+ See 1 more…
See all biosamples
Download