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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
151
total RNA-seq
85
single cell RNA-seq
16
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
240
Transcription
172
DNA binding
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
23
transcription factor
12
control
6
RNA binding protein
Date released
228
May, 2021
45
May, 2020
44
February, 2023
40
September, 2020
36
August, 2021
33
May, 2022
12
February, 2021
5
March, 2023
Available data
229
bigWig
180
bam
128
bed narrowPeak
105
tsv
84
tagAlign
73
fastq
52
zippedFastqFolder
4
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
439
Homo sapiens
Biosample type
356
primary cell
tissue
44
in vitro differentiated cells
41
cell line
2
stem cell
Organ
109
epithelium
pancreas
31
liver
3
connective tissue
2
kidney
1
bone element
1
bone marrow
Project
201
T1D
124
HPAP
113
AMP
4
community
1
ITG
Genome assembly (visualization)
232
hg19
181
GRCh38
Lab
AMP-T2D consortium
278
Kyle Gaulton, UCSD
124
Klaus Kaestner, Upenn
34
Bing Ren, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
6
inconsistent ontology term
assay_slims!
DNA accessibility
biosample_type!
tissue
lab.title!
AMP-T2D consortium
organ_slims!
pancreas
BIOSAMPLE
ASSAY
443 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte
84
53
1
Langerhans cell
85
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
+ See 33 more…
in vitro differentiated cells
embryonic stem cell
37
5
adipocyte
1
osteoblast
1
cell line
HepG2
18
9
2
1
1
EndoC_BH1
3
2
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
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