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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
Assay category
415
DNA binding
DNA accessibility
Target of assay
339
transcription factor
81
recombinant protein
72
RNA binding protein
71
histone
71
histone modification
37
narrow histone mark
34
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
27
December, 2018
16
October, 2019
15
January, 2019
14
August, 2017
14
December, 2017
14
June, 2019
4
May, 2019
Available data
1255
bam
1194
bigWig
863
fastq
679
bed narrowPeak
490
tsv
415
bigBed narrowPeak
146
tagAlign
93
zippedFastqFolder
79
bed broadPeak
79
bigBed broadPeak
25
bed bed3+
12
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
cool
3
tar
2
csv
2
ibed
1
txt
1
vcf
Organism
415
Homo sapiens
Biosample type
tissue
353
cell line
48
primary cell
14
in vitro differentiated cells
Organ
307
liver
54
blood
54
bodily fluid
36
epithelium
14
vasculature
12
blood vessel
10
vein
connective tissue
8
musculature of body
6
brain
6
kidney
6
pancreas
3
heart
2
eye
Project
415
AMP
Genome assembly (visualization)
411
hg19
382
GRCh38
Lab
415
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
tissue
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
415 results
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ChIP-seq
cell line
HepG2
293
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
skeletal muscle satellite cell
7
kidney epithelial cell
4
astrocyte of the cerebellum
2
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in vitro differentiated cells
hepatocyte
14
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