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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
26
ChIP-seq
4
Hi-C
Assay category
54
Transcription
26
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
18
October, 2019
4
July, 2019
3
November, 2017
1
March, 2020
Available data
80
bam
75
bigWig
54
tsv
16
bed narrowPeak
12
bigBed narrowPeak
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
2
hdf5
2
hic
1
bedpe bed3+
Organism
84
Homo sapiens
Biosample type
tissue
58
cell line
26
primary cell
Organ
426
liver
398
epithelium
350
pancreas
connective tissue
88
vasculature
84
blood vessel
69
heart
60
artery
60
blood
60
bodily fluid
42
kidney
37
embryo
19
vein
16
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
84
AMP
Genome assembly (visualization)
77
hg19
70
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA accessibility
biosample_type!
tissue
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
84 results
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total RNA-seq
ChIP-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
6
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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