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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
8
total RNA-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
DNA accessibility
15
DNA binding
8
Transcription
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
February, 2021
15
November, 2019
6
November, 2020
5
May, 2021
3
March, 2020
2
August, 2021
1
February, 2023
1
October, 2019
Available data
23
bam
21
bigWig
13
bed narrowPeak
8
tsv
1
bedpe bed3+
1
hic
Organism
32
Homo sapiens
Biosample type
309
primary cell
33
cell line
24
in vitro differentiated cells
3
tissue
Organ
399
liver
60
blood
60
bodily fluid
46
pancreas
33
epithelium
18
kidney
8
embryo
1
mammary gland
Project
29
AMP
4
T1D
Genome assembly (visualization)
22
hg19
21
GRCh38
Lab
27
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
31
inconsistent ontology term
assay_slims!
DNA accessibility
month_released!
February, 2021
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
15
7
6
2
1
1
glomerular visceral epithelial cell
1
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