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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
3
MeRIP-seq
Assay category
77
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
56
November, 2017
6
October, 2019
4
August, 2021
3
February, 2021
3
January, 2019
3
November, 2018
3
November, 2020
2
November, 2019
Available data
73
bam
62
fastq
13
bigWig
4
tagAlign
Organism
80
Homo sapiens
Biosample type
181
tissue
80
cell line
37
in vitro differentiated cells
32
primary cell
1
stem cell
Organ
60
liver
11
pancreas
6
blood
6
bodily fluid
5
epithelium
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
80
AMP
Genome assembly (visualization)
13
hg19
Lab
73
AMP-T2D consortium
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
kidney
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
60
GM12878
6
Panc1
6
EndoC_BH1
2
3
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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