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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
382
total RNA-seq
189
single cell RNA-seq
47
WGBS
21
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
1
DNAme array
1
small RNA-seq
Assay category
572
Transcription
477
DNA binding
DNA accessibility
58
DNA methylation
14
3D chromatin structure
Target of assay
349
histone
349
histone modification
178
broad histone mark
170
narrow histone mark
72
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
320
May, 2021
121
August, 2017
80
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
43
December, 2017
42
February, 2021
39
February, 2018
34
August, 2021
31
June, 2019
31
October, 2019
29
July, 2019
9
March, 2020
9
November, 2017
7
December, 2019
5
May, 2019
4
January, 2018
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
766
bam
749
bigWig
488
fastq
387
tsv
336
bed narrowPeak
140
tagAlign
93
zippedFastqFolder
71
bigBed narrowPeak
31
bed bed3+
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bedpe bed3+
10
bigBed bedMethyl
10
hic
4
hdf5
3
cool
2
csv
2
ibed
Organism
1148
Homo sapiens
Biosample type
1827
tissue
798
primary cell
631
cell line
350
in vitro differentiated cells
10
stem cell
Organ
339
epithelium
278
pancreas
110
connective tissue
30
vasculature
29
embryo
26
blood vessel
26
liver
24
kidney
19
vein
16
brain
13
musculature of body
11
heart
4
eye
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
724
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
773
hg19
705
GRCh38
4
hg18
Lab
645
AMP-T2D consortium
273
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
144
inconsistent ontology term
6
audit script error
Audit category:
50
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1148 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
DNAme array
small RNA-seq
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
+ See 26 more…
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