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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
single cell RNA-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
249
Transcription
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
79
May, 2021
76
February, 2023
47
May, 2020
41
May, 2022
28
July, 2019
26
August, 2017
26
September, 2018
16
September, 2020
11
October, 2019
8
February, 2021
8
June, 2019
5
December, 2019
4
November, 2020
3
November, 2017
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
Available data
405
bigWig
395
bam
bed narrowPeak
221
fastq
158
tsv
100
tagAlign
57
bigBed narrowPeak
41
zippedFastqFolder
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
Organism
387
Homo sapiens
Biosample type
1532
tissue
387
primary cell
239
cell line
239
in vitro differentiated cells
8
stem cell
Organ
179
epithelium
155
pancreas
18
connective tissue
16
vasculature
14
blood vessel
12
kidney
9
vein
8
liver
7
brain
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
142
HPAP
132
AMP
112
T1D
1
ITG
Genome assembly (visualization)
195
hg19
165
GRCh38
Lab
142
Klaus Kaestner, Upenn
127
AMP-T2D consortium
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
12
inconsistent ontology term
4
audit script error
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
387 results
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total RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
6
31
1
monocyte
54
1
1
1
pancreatic beta cell
21
6
16
1
exocrine cell
39
pancreatic endocrine cell
12
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