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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
154
total RNA-seq
117
single cell RNA-seq
17
pCHi-C
4
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
DNA accessibility
187
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
171
histone
171
histone modification
91
broad histone mark
80
narrow histone mark
14
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
47
May, 2020
40
September, 2020
39
February, 2023
33
May, 2022
28
August, 2017
25
June, 2019
18
July, 2019
15
July, 2018
14
February, 2021
12
September, 2018
10
April, 2018
4
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
Available data
323
bigWig
293
bam
160
bed narrowPeak
143
fastq
142
tsv
96
tagAlign
52
zippedFastqFolder
35
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
5
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
hic
Organism
485
Homo sapiens
Biosample type
2264
tissue
572
cell line
485
primary cell
327
in vitro differentiated cells
10
stem cell
Organ
epithelium
275
pancreas
31
connective tissue
30
vasculature
26
blood vessel
24
kidney
19
vein
16
brain
13
musculature of body
11
liver
10
heart
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
196
T1D
164
AMP
124
HPAP
1
ITG
Genome assembly (visualization)
328
hg19
284
GRCh38
Lab
231
Kyle Gaulton, UCSD
129
AMP-T2D consortium
124
Klaus Kaestner, Upenn
1
ITG
Audit category:
31
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
485 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
Langerhans cell
85
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
1
pancreatic endocrine cell
23
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