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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
Assay category
35
DNA binding
DNA accessibility
Target of assay
30
histone
30
histone modification
16
narrow histone mark
14
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
19
June, 2019
14
August, 2017
2
November, 2017
Available data
323
bigWig
293
bam
160
bed narrowPeak
143
fastq
142
tsv
96
tagAlign
52
zippedFastqFolder
35
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
5
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
hic
Organism
35
Homo sapiens
Biosample type
377
tissue
353
cell line
35
primary cell
Organ
epithelium
14
vasculature
12
blood vessel
10
vein
9
connective tissue
8
musculature of body
6
brain
6
kidney
3
heart
2
eye
Project
35
AMP
Genome assembly (visualization)
35
hg19
34
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
primary cell
skeletal muscle myoblast
14
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
3
astrocyte of the cerebellum
2
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