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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
single cell RNA-seq
41
ChIP-seq
39
total RNA-seq
1
RRBS
Assay category
101
Transcription
41
DNA binding
DNA accessibility
1
DNA methylation
Target of assay
36
histone
36
histone modification
19
narrow histone mark
17
broad histone mark
3
RNA binding protein
3
transcription factor
2
control
1
chromatin remodeller
Date released
39
February, 2023
28
August, 2017
22
September, 2020
15
July, 2018
12
February, 2021
12
September, 2018
9
April, 2018
3
November, 2017
2
June, 2018
1
November, 2018
Available data
323
bigWig
293
bam
160
bed narrowPeak
143
fastq
142
tsv
96
tagAlign
52
zippedFastqFolder
35
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
5
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
hic
Organism
143
Homo sapiens
Biosample type
427
cell line
336
tissue
143
primary cell
121
in vitro differentiated cells
4
stem cell
Organ
226
pancreas
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
73
HPAP
70
AMP
Genome assembly (visualization)
68
hg19
64
GRCh38
Lab
73
Klaus Kaestner, Upenn
70
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
143 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
RRBS
primary cell
exocrine cell
39
Langerhans cell
34
pancreatic endocrine cell
23
skeletal muscle myoblast
15
1
pancreatic cell
9
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