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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
55
total RNA-seq
16
pCHi-C
1
DNAme array
Assay category
121
DNA binding
55
Transcription
DNA accessibility
1
DNA methylation
Target of assay
118
histone
118
histone modification
66
broad histone mark
52
narrow histone mark
3
control
Date released
193
May, 2021
47
May, 2020
40
September, 2020
39
February, 2023
33
May, 2022
28
August, 2017
25
June, 2019
18
July, 2019
15
July, 2018
14
February, 2021
12
September, 2018
10
April, 2018
4
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
Available data
171
bigWig
136
bam
114
bed narrowPeak
84
tagAlign
52
tsv
2
bed bed3+
Organism
193
Homo sapiens
Biosample type
193
primary cell
122
in vitro differentiated cells
40
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
Project
151
T1D
42
AMP
Genome assembly (visualization)
171
hg19
136
GRCh38
Lab
186
Kyle Gaulton, UCSD
7
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
organ_slims!
epithelium
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
total RNA-seq
pCHi-C
DNAme array
primary cell
monocyte
85
52
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
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