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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
42
ChIP-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
58
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
75
May, 2021
74
May, 2022
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
27
September, 2018
20
February, 2021
16
August, 2017
12
June, 2019
6
November, 2017
6
October, 2019
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
292
bam
276
fastq
275
bigWig
258
tsv
93
zippedFastqFolder
10
bed bedMethyl
10
bed narrowPeak
10
bigBed bedMethyl
10
bigBed narrowPeak
7
bed bed3+
6
hic
5
bed broadPeak
5
bigBed broadPeak
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
Organism
563
Homo sapiens
Biosample type
1675
tissue
593
cell line
563
primary cell
239
in vitro differentiated cells
8
stem cell
Organ
249
epithelium
217
pancreas
23
connective tissue
14
kidney
13
brain
13
vasculature
10
blood vessel
8
heart
8
liver
5
musculature of body
4
vein
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
227
HPAP
223
AMP
112
T1D
1
ITG
Genome assembly (visualization)
291
hg19
262
GRCh38
Lab
227
Klaus Kaestner, Upenn
218
AMP-T2D consortium
117
Kyle Gaulton, UCSD
1
ITG
Audit category:
22
inconsistent ontology term
4
audit script error
assay_slims!
DNA accessibility
target.investigated_as!
histone
BIOSAMPLE
ASSAY
563 results
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total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
31
6
1
Langerhans cell
85
monocyte
54
1
1
pancreatic beta cell
21
12
16
6
1
exocrine cell
39
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