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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
550
ChIP-seq
16
WGBS
16
small RNA-seq
Assay category
918
Transcription
550
DNA binding
DNA accessibility
16
DNA methylation
Target of assay
459
histone modification
458
histone
236
narrow histone mark
222
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
162
May, 2020
155
August, 2017
155
October, 2019
116
July, 2018
92
May, 2019
64
April, 2019
57
November, 2017
55
July, 2019
45
October, 2018
38
May, 2021
36
December, 2017
19
November, 2019
13
November, 2018
9
March, 2020
6
April, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
September, 2017
1
May, 2023
Available data
1481
bam
1477
bigWig
917
tsv
524
bed narrowPeak
376
bigBed narrowPeak
260
fastq
116
tagAlign
28
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
14
bed broadPeak
1
tagAlign bed3+
Organism
1478
Homo sapiens
Biosample type
1484
tissue
460
primary cell
452
cell line
247
in vitro differentiated cells
3
stem cell
Organ
475
connective tissue
417
adipose tissue
353
pancreas
234
liver
174
brain
85
heart
62
blood vessel
62
vasculature
58
bone element
52
limb
28
nerve
22
kidney
21
artery
14
spleen
10
musculature of body
1
pituitary gland
Project
1482
AMP
2
T1D
Genome assembly (visualization)
1484
GRCh38
1467
hg19
Lab
1484
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
1484 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
liver
147
75
1
bone tissue
58
heart left ventricle
3
28
2
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