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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
ChIP-seq
Assay category
302
DNA binding
Target of assay
627
histone modification
626
histone
324
narrow histone mark
302
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
72
August, 2017
56
May, 2019
42
November, 2017
39
October, 2019
37
April, 2019
20
May, 2024
19
October, 2018
10
October, 2017
4
January, 2019
3
December, 2017
Available data
252
bed narrowPeak
252
bigWig
221
bam
203
bigBed narrowPeak
75
tagAlign
44
fastq
19
bed broadPeak
6
bed bed3+
Organism
299
Homo sapiens
Biosample type
302
tissue
121
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
57
heart
40
pancreas
36
blood vessel
36
vasculature
34
limb
25
liver
20
adipose tissue
20
connective tissue
16
musculature of body
16
nerve
14
artery
10
kidney
4
spleen
Project
302
AMP
Genome assembly (visualization)
241
GRCh38
197
hg19
Lab
282
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
Audit category:
4
missing controlled_by
Audit category:
3
inconsistent control read length
inconsistent assembly
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
302 results
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ChIP-seq
tissue
liver
22
left cardiac atrium
20
subcutaneous abdominal adipose tissue
20
tibial nerve
16
heart left ventricle
15
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