Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1278
total RNA-seq
1175
ChIP-seq
367
single cell RNA-seq
87
RNA microarray
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1663
Transcription
1175
DNA binding
DNA accessibility
96
DNA methylation
26
3D chromatin structure
Target of assay
854
histone modification
853
histone
431
narrow histone mark
422
broad histone mark
222
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
557
February, 2021
323
August, 2017
249
October, 2019
240
May, 2020
233
May, 2021
168
July, 2018
163
August, 2021
120
May, 2019
101
May, 2022
100
July, 2019
91
November, 2017
90
February, 2023
80
April, 2019
75
October, 2018
59
September, 2018
56
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
40
May, 2024
39
March, 2020
31
June, 2019
25
February, 2020
20
November, 2019
17
November, 2018
15
October, 2017
9
April, 2020
8
December, 2019
8
November, 2020
7
December, 2018
7
January, 2019
6
September, 2017
4
May, 2023
3
August, 2018
3
June, 2018
3
October, 2022
1
March, 2019
1
March, 2023
Available data
2146
bam
2042
bigWig
1333
tsv
810
bed narrowPeak
674
fastq
427
bigBed narrowPeak
338
tagAlign
156
txt
93
zippedFastqFolder
56
bed broadPeak
38
bed bed3+
35
bed bedMethyl
35
bigBed bedMethyl
21
bigBed broadPeak
17
hic
14
bedpe bed3+
8
csv
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
Organism
3088
Homo sapiens
Biosample type
2301
tissue
795
primary cell
605
cell line
334
in vitro differentiated cells
8
stem cell
Organ
689
pancreas
570
connective tissue
482
adipose tissue
346
liver
314
epithelium
257
heart
249
brain
173
kidney
147
bone element
120
vasculature
116
blood vessel
78
limb
61
musculature of body
40
nerve
34
artery
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2606
AMP
227
HPAP
206
T1D
47
KPMP
9
LungMap
1
ITG
Genome assembly (visualization)
1977
hg19
1973
GRCh38
Lab
2440
AMP-T2D consortium
244
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
ITG
Audit category:
128
inconsistent ontology term
27
inconsistent control
11
audit script error
Audit category:
70
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
3096 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
6
4
3
1
4
liver
167
144
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
+ See 149 more…
primary cell
monocyte
54
85
1
1
pancreatic alpha cell
52
11
12
31
1
Langerhans cell
85
pancreatic beta cell
21
11
12
16
1
exocrine cell
39
+ See 81 more…
See all biosamples
Download