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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
97
total RNA-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
Assay category
220
DNA binding
103
Transcription
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
171
August, 2017
58
October, 2018
48
December, 2017
16
November, 2018
9
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
May, 2022
6
September, 2017
2
July, 2018
Available data
1662
bam
1548
bigWig
1075
tsv
595
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
329
Homo sapiens
Biosample type
427
cell line
349
primary cell
336
tissue
140
in vitro differentiated cells
4
stem cell
Organ
184
pancreas
79
liver
40
adipose tissue
40
connective tissue
22
spleen
9
brain
2
musculature of body
Project
336
AMP
Genome assembly (visualization)
260
GRCh38
255
hg19
Lab
330
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
award.project!
LungMap
BIOSAMPLE
ASSAY
336 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
RRBS
tissue
islet of Langerhans
28
97
6
liver
67
1
1
body of pancreas
33
2
spleen
20
2
pancreas
16
2
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