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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
629
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
629
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
407
histone modification
406
histone
207
broad histone mark
199
narrow histone mark
135
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
220
August, 2017
173
October, 2019
159
August, 2021
143
May, 2020
120
July, 2018
115
May, 2019
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2017
16
November, 2018
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
1
October, 2017
Available data
1662
bam
1508
bigWig
1075
tsv
555
bed narrowPeak
377
bigBed narrowPeak
336
fastq
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2028
Homo sapiens
Biosample type
2029
tissue
700
primary cell
611
cell line
311
in vitro differentiated cells
10
stem cell
Organ
531
connective tissue
472
adipose tissue
407
pancreas
266
liver
207
heart
149
kidney
146
bone element
115
brain
90
blood vessel
90
vasculature
78
limb
40
nerve
33
musculature of body
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1963
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1368
GRCh38
1362
hg19
Lab
1872
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
2029 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
298
62
4
3
1
4
liver
167
75
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
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