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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
948
total RNA-seq
691
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1138
Transcription
691
DNA binding
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
469
histone
469
histone modification
259
narrow histone mark
210
broad histone mark
158
control
66
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1496
bam
1334
bigWig
986
tsv
493
bed narrowPeak
359
bigBed narrowPeak
179
tagAlign
165
fastq
156
txt
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
9
bed broadPeak
6
csv
2
bed bed3+
1
bedpe
1
tagAlign bed3+
Organism
1987
Homo sapiens
Biosample type
1988
tissue
746
primary cell
631
cell line
284
in vitro differentiated cells
10
stem cell
Organ
483
connective tissue
424
adipose tissue
284
liver
278
pancreas
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
40
nerve
32
artery
25
eye
23
spleen
22
musculature of body
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1922
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1329
GRCh38
1291
hg19
Lab
1831
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
August, 2017
BIOSAMPLE
ASSAY
1988 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
liver
167
97
1
1
1
1
islet of Langerhans
209
29
4
3
1
4
kidney
49
27
64
1
1
bone element
84
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