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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
total RNA-seq
712
ChIP-seq
173
single cell RNA-seq
87
RNA microarray
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
712
DNA binding
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
523
histone
523
histone modification
265
narrow histone mark
258
broad histone mark
141
control
50
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
536
February, 2021
227
August, 2017
216
October, 2019
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
61
July, 2019
47
September, 2023
40
May, 2021
35
March, 2020
24
February, 2020
20
November, 2019
15
October, 2017
14
February, 2023
12
November, 2018
9
April, 2020
7
December, 2018
7
January, 2019
7
May, 2022
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1378
bam
1267
bigWig
921
tsv
466
bed narrowPeak
332
bigBed narrowPeak
257
fastq
168
tagAlign
156
txt
35
bed broadPeak
25
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
csv
1
bedpe
1
tagAlign bed3+
Organism
1923
Homo sapiens
Biosample type
1931
tissue
789
primary cell
336
in vitro differentiated cells
231
cell line
10
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1865
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1250
GRCh38
1223
hg19
Lab
1794
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
liver
BIOSAMPLE
ASSAY
1931 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
298
71
4
3
1
4
kidney
49
27
64
1
1
bone element
84
heart left ventricle
3
35
18
1
4
1
1
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