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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1032
total RNA-seq
838
ChIP-seq
173
single cell RNA-seq
87
RNA microarray
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
838
DNA binding
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
568
histone modification
567
histone
300
narrow histone mark
267
broad histone mark
183
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
253
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
108
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
62
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
33
March, 2020
26
May, 2022
23
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1650
bam
1484
bigWig
1068
tsv
536
bed narrowPeak
371
bigBed narrowPeak
334
fastq
223
tagAlign
156
txt
28
bed bed3+
22
bed bedMethyl
22
bed broadPeak
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2211
Homo sapiens
Biosample type
2219
tissue
787
primary cell
631
cell line
351
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2153
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1474
GRCh38
1440
hg19
Lab
2062
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2219 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
298
71
4
3
1
4
liver
167
145
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
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