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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1014
total RNA-seq
671
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
23
pCHi-C
16
Hi-C
12
small RNA-seq
10
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1206
Transcription
671
DNA binding
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
444
histone modification
443
histone
233
broad histone mark
210
narrow histone mark
162
control
67
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
193
May, 2020
159
August, 2021
137
October, 2019
120
July, 2018
87
May, 2019
80
April, 2019
74
October, 2018
60
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
36
March, 2020
27
May, 2022
21
December, 2017
20
November, 2019
16
November, 2018
14
February, 2023
13
February, 2020
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1439
bam
1349
bigWig
1052
tsv
404
bed narrowPeak
300
fastq
262
bigBed narrowPeak
156
txt
120
tagAlign
28
bed bed3+
26
bed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
2039
Homo sapiens
Biosample type
2047
tissue
784
primary cell
630
cell line
351
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
309
liver
247
heart
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1981
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1323
GRCh38
1316
hg19
Lab
1850
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
86
inconsistent ontology term
inconsistent control
7
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
brain
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
2047 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
6
4
3
1
4
liver
167
118
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
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