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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
537
February, 2021
159
August, 2021
143
May, 2020
120
July, 2018
103
August, 2017
69
July, 2019
47
September, 2023
40
May, 2021
35
March, 2020
27
May, 2022
27
October, 2019
25
February, 2020
20
November, 2019
14
February, 2023
9
April, 2020
6
April, 2018
6
November, 2018
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1074
tsv
940
bam
933
bigWig
156
txt
116
fastq
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1398
Homo sapiens
Biosample type
1399
tissue
521
primary cell
153
in vitro differentiated cells
147
cell line
7
stem cell
Organ
465
connective tissue
407
adipose tissue
306
pancreas
181
liver
146
bone element
124
heart
122
kidney
24
brain
23
eye
19
musculature of body
17
blood vessel
17
vasculature
12
limb
10
lung
5
nerve
4
artery
4
skeleton
3
epithelium
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
large intestine
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1335
AMP
47
KPMP
9
LungMap
8
T1D
Genome assembly (visualization)
938
hg19
934
GRCh38
Lab
1242
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
7
audit script error
assay_slims!
DNA accessibility
organ_slims!
large intestine
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
1399 results
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total RNA-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
292
6
4
3
1
4
liver
167
1
3
1
1
1
1
kidney
49
64
1
1
bone element
84
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