Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1026
total RNA-seq
877
ChIP-seq
179
single cell RNA-seq
87
RNA microarray
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
877
DNA binding
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
602
histone modification
601
histone
314
narrow histone mark
287
broad histone mark
183
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
253
August, 2017
221
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
108
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
62
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
33
March, 2020
26
May, 2022
23
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1650
bam
1524
bigWig
1068
tsv
576
bed narrowPeak
371
bigBed narrowPeak
334
fastq
223
tagAlign
156
txt
28
bed bed3+
22
bed bedMethyl
22
bed broadPeak
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2250
Homo sapiens
Biosample type
2258
tissue
787
primary cell
631
cell line
351
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2192
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1514
GRCh38
1440
hg19
Lab
2061
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
organ_slims!
musculature of body
lymph node
BIOSAMPLE
ASSAY
2258 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
70
6
4
3
1
4
liver
167
145
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
+ See 144 more…
See all biosamples
Download