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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
879
ChIP-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
MeRIP-seq
Assay category
879
DNA binding
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
214
October, 2019
188
August, 2017
111
May, 2019
85
February, 2021
82
November, 2017
76
April, 2019
63
October, 2018
60
August, 2021
50
May, 2020
47
September, 2023
46
December, 2017
35
May, 2024
27
May, 2022
22
July, 2019
16
November, 2018
15
October, 2017
11
March, 2020
10
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
September, 2017
4
July, 2018
4
May, 2023
4
November, 2020
2
May, 2021
1
December, 2019
1
March, 2019
1
November, 2019
Available data
1639
bam
1521
bigWig
tsv
569
bed narrowPeak
357
bigBed narrowPeak
321
fastq
238
tagAlign
156
txt
35
bed broadPeak
26
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1196
Homo sapiens
Biosample type
1204
tissue
532
primary cell
448
cell line
209
in vitro differentiated cells
6
stem cell
Organ
210
brain
180
liver
141
pancreas
136
kidney
126
heart
88
bone element
77
connective tissue
76
adipose tissue
73
blood vessel
73
vasculature
71
limb
41
musculature of body
35
nerve
27
artery
22
spleen
20
eye
9
lung
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pericardium
1
pituitary gland
1
thymus
Project
1138
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
580
GRCh38
528
hg19
Lab
1013
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
35
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
86
inconsistent ontology term
27
inconsistent control
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
target.investigated_as!
RNA binding protein
files.file_type!
tsv
BIOSAMPLE
ASSAY
1204 results
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Clear Filters
ChIP-seq
total RNA-seq
RNA microarray
single cell RNA-seq
WGBS
Hi-C
RRBS
pCHi-C
MeRIP-seq
tissue
liver
144
20
1
3
1
1
kidney
26
49
59
1
1
islet of Langerhans
69
31
3
1
4
4
bone element
84
subcutaneous abdominal adipose tissue
36
3
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